Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs4919694 | chr10:104698978 | T/C | 3.64E-8 | 488 | 15.33 | 17.13 | 19.1 | KM Plot |
| THCA | rs4924532 | chr15:41284122 | T/C | 0.000229 | 484 | 17.03 | 16.33 | 15.02 | KM Plot |
| THCA | rs4930698 | chr11:64085063 | G/C | 1.1E-6 | 482 | 15.9 | 16.8 | 33.97 | KM Plot |
| THCA | rs4934236 | chr10:81627988 | C/A | 5.18E-5 | 469 | 15.68 | 17.43 | 6.03 | KM Plot |
| THCA | rs4934238 | chr10:81628030 | A/T | 5.16E-5 | 468 | 15.68 | 17.63 | 6.03 | KM Plot |
| THCA | rs4949666 | chr1:75818830 | T/C | 0.000219 | 480 | 15.7 | 16.47 | 14.1 | KM Plot |
| THCA | rs4952884 | chr2:47590762 | C/T | 1.28E-14 | 480 | 15.9 | 15.97 | 14.32 | KM Plot |
| THCA | rs4952901 | chr2:48211454 | T/G | 0.000282 | 481 | 16.27 | 16.23 | 14.75 | KM Plot |
| THCA | rs4952904 | chr2:48329115 | G/A | 4.22E-6 | 476 | 14.73 | 16.02 | 15.95 | KM Plot |
| THCA | rs4953536 | chr2:48214219 | G/A | 0.000323 | 486 | 15.42 | 16.23 | 15.7 | KM Plot |
| THCA | rs4953548 | chr2:48346366 | C/T | 0.000288 | 481 | 15 | 17.35 | 14.28 | KM Plot |
| THCA | rs4953556 | chr2:48401619 | T/A | 1.39E-5 | 487 | 14.93 | 17.63 | 14.47 | KM Plot |
| THCA | rs4981297 | chr14:36029197 | T/C | 5.91E-6 | 481 | 16.22 | 16.07 | 8.33 | KM Plot |
| THCA | rs4981301 | chr14:36202799 | T/A | 5.08E-6 | 490 | 15.97 | 16.07 | 8.33 | KM Plot |
| THCA | rs4981304 | chr14:36242166 | C/T | 5.07E-6 | 490 | 16.2 | 15.9 | 8.33 | KM Plot |